PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT01554
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family B3
Protein Properties Length: 394aa    MW: 43842.9 Da    PI: 10.3296
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT01554genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.55.7e-14304388394
               EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE.......EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
        B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliy.....rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
               k+ ++ +vlk++  +lp++f      ++  s ++ l+  es +sWev+        rk   +  l +GW +F+k+ngLk+gD+++Fk+++    +l++
  EMT01554 304 KTISSGSVLKKC--SLPRPFG----FVE--SCKIALKPmESDNSWEVEGVAlspgtRKA--TNRLVTGWPKFCKENGLKAGDTCTFKVVD---STLWH 388
               556666777777..9999996....343..346888887999*******7777643333..366889********************654...33354 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010190.1216107IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.9E-720105IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.69E-725105IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508637.51455107IPR003340B3 DNA binding domain
SMARTSM010190.0053302394IPR003340B3 DNA binding domain
CDDcd100176.10E-10304380No hitNo description
SuperFamilySSF1019363.53E-12305393IPR015300DNA-binding pseudobarrel domain
PfamPF023628.4E-11310392IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.6E-12322393IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.771328394IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MGSSGNYGMR TKMQQMVKLT ASKYLRINDE TARWFDTGDR GAEHKAHIMS PFGKKPWGIT  60
VGARAKGLCW GDGWPQFVAA HGIGVGCYLV FKHVLRGTVT LKVFDDGFVI KPFGLTITVL  120
SPPEIENAFA RKPQFIVPFQ TSFKEKMPIP PEFLRRGYIS EEDLNRPKPA AIFSTSWHID  180
LEKDGPNVFF AGPLWPKFLE HKNLSETHVL LIKPMDMGIM STLSKKQARL SKASNIKLIT  240
TIVLSAPGAQ SQEEEHVSTP KTPKRKRSKS ERMVESPTTS GHLNKKTKCV YELGSAGSQA  300
WLRKTISSGS VLKKCSLPRP FGFVESCKIA LKPMESDNSW EVEGVALSPG TRKATNRLVT  360
GWPKFCKENG LKAGDTCTFK VVDSTLWHVV IDRC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLN1QPJ30.0N1QPJ3_AEGTA; Putative B3 domain-containing protein
STRINGMLOC_28796.51e-122(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42535187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31690.17e-06B3 family protein